cpDNA alignments and R-skript for Historical Biogeography of Zygophyllaceae in the Atacama Desert
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| Title: | Main Title: cpDNA alignments and R-skript for Historical Biogeography of Zygophyllaceae in the Atacama Desert |
| Description: | Abstract: The dataset contains sequence information of the historical biogeographic study of the plant family Zygophyllaceae in the Atacama Desert. We provide three nexus files containing chloroplast sequence data used for all phylogenetic divergence time estimation analysis of the paper. The first nexus file (Zygophyllales_CP_Master.nex) contains the concatenated sequence alignment with character set annotations for the three-chloroplast marker (rbcL, trnL-trnF, trnS-trnG) as well as for hotspot regions and sequence inversions which were excluded and reverse complemented for analysis. The second nexus file (Zygophyllales_CP_Master_HSEX_INVREV_BEAST.nex) is identical to the first one except from the fact that all hotspot regions were excluded and the inversions reverse complemented. This dataset was used for the dating analyses. The third nexus file (Zygophyllales_CP_Master_HSEX_INVREV_RAxML.nex) was used for the phylogenetic reconstruction using a Maximum Likelihood approach. Finally, we provide the R-skript used to plot the time calibrated trees and the ancestral area reconstruction. |
| Identifier: | 10.5880/CRC1211DB.32 (DOI) |
Responsible Party
| Creators: | Tim Böhnert (Author), Maximilian Weigend (Author), Felix F. Merklinger (Author), Dietmar Quandt (Author), Federico Luebert (Author) |
| Funding Reference: | Deutsche Forschungsgemeinschaft (DFG): CRC 1211: Earth - Evolution at the Dry Limit |
| Publisher: | CRC1211 Database (CRC1211DB) |
| Publication Year: | 2019 |
Topic
| CRC1211 Topic: | Biology |
| Related Subproject: | B1 |
| Subjects: | Keywords: Biogeography, Arid Zone, Molecular Biology, Phylogeny, Evolution |
File Details
| Filename: | Boehnert_etal_Zygo_SuppMaterial.zip |
| Data Type: | Dataset - Dataset |
| File Size: | 73 KB |
| Date: | Created: 04.11.2019 |
| Mime Type: | application/zip |
| Data Format: | ZIP |
| Language: | English |
| Status: | Completed |
Archive Content
Constraints
| Download Permission: | Free |
| General Access and Use Conditions: | According to the CRC1211DB data policy agreement. |
| Access Limitations: | According to the CRC1211DB data policy agreement. |
| Licence: | [Creative Commons] Attribution-ShareAlike 4.0 International (CC BY-SA 4.0) |
Geographic
Specific Information - Data
| Temporal Extent: | 03.07.2019, 09:51:00 - 02.12.2019, 09:52:00 |
| Subtype: | Natural Science Data |
Metadata Details
| Metadata Creator: | Tim Böhnert |
| Metadata Created: | 12.12.2019 |
| Metadata Last Updated: | 12.12.2019 |
| Subproject: | B1 |
| Funding Phase: | 1 |
| Metadata Language: | English |
| Metadata Version: | V50 |
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Dataset Statistics
| Page Visits: | 563 |
| Metadata Downloads: | 0 |
| Dataset Downloads: | 16 |
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Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
Adequate reference when this dataset will be discussed or used in any publication or presentation is mandatory. In this case please contact the dataset creator.
